Hi,
I have seen some recent papers using MAQ and assume it is because it includes quality information?
Do you know of any better open source software that does this? I initially thought that quality scores weren't so useful, do they generally improve alignments or are they only useful in specific circumstances?
Thanks in advance!
I have seen some recent papers using MAQ and assume it is because it includes quality information?
Do you know of any better open source software that does this? I initially thought that quality scores weren't so useful, do they generally improve alignments or are they only useful in specific circumstances?
Thanks in advance!
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