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Old 07-20-2010, 06:27 AM   #1
Location: honston

Join Date: Nov 2009
Posts: 27
Default Can maq support multiple threads?

Hi everyone,
can maq support mutiple threads (processors)? just like the "-t INT number of threads [1]" parameter in bwa or "-p/--threads <int> number of alignment threads to launch (default: 1)" parameter in bowtie


Last edited by genelab; 07-20-2010 at 09:40 AM.
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Old 07-21-2010, 12:00 AM   #2
Location: France

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No. The 'overriding' generally used for that is to launch separated MAQ process with 2 millions sequences/couples each... And then you can merge them.
For that you need a system to launch in queue, or your system will explose (fork-bomb like )
Francois Sabot, PhD

Be realistic. Demand the Impossible.
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