SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics
Similar Threads
Thread Thread Starter Forum Replies Last Post
Why so short readlength? chenglei SOLiD 1 11-15-2010 06:50 AM
Maq multiple hits file Lesley Bioinformatics 1 12-09-2009 03:12 AM
maq multiple hits information? baohua100 Bioinformatics 15 08-13-2009 01:31 PM
multiple runs and maq Layla Bioinformatics 8 05-14-2009 12:18 AM
Maq multiple map output (-H) torrey Bioinformatics 0 03-06-2009 10:34 AM

Reply
 
Thread Tools
Old 07-20-2010, 06:27 AM   #1
genelab
Member
 
Location: honston

Join Date: Nov 2009
Posts: 27
Default Can maq support multiple threads?

Hi everyone,
can maq support mutiple threads (processors)? just like the "-t INT number of threads [1]" parameter in bwa or "-p/--threads <int> number of alignment threads to launch (default: 1)" parameter in bowtie

Thanks!

Last edited by genelab; 07-20-2010 at 09:40 AM.
genelab is offline   Reply With Quote
Old 07-21-2010, 12:00 AM   #2
francois.sabot
Member
 
Location: France

Join Date: Dec 2009
Posts: 41
Default

No. The 'overriding' generally used for that is to launch separated MAQ process with 2 millions sequences/couples each... And then you can merge them.
For that you need a system to launch in queue, or your system will explose (fork-bomb like )
__________________
Francois Sabot, PhD

Be realistic. Demand the Impossible.
www.wikiposon.org
francois.sabot is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off



All times are GMT -8. The time now is 07:29 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2022, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO