NGS assembly analysis

[anuragk]

Hello,

I want to know the tools for NGS assembly analysis. And on what algorithm and programming languages these tools are developed in.

[guptavipin142]

For NGS assembly
for genomes you can go with abyss
and for
Metagenome you can go with Velvet 1.2.10
both are debruigen denovo assembler

[boetsie]

I think this paper is a good start to give you an overview of the different stages of assembly, but also about pre and postprocessing;

http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003345

[anuragk]

Thanks for your reply