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Old 03-28-2019, 06:47 AM   #1
sjuzhet
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Location: Australia

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Default Is there something like PicardTool's CollectRNASeqMetrics but on a gene level?

I'm trying to figure out intron% and 5' and 3' biases in individual genes.
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Old 03-28-2019, 06:59 AM   #2
GenoMax
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You could run featureCounts at exon level and not summarize at gene level. For introns you may need to create a bed file with `bedtools complement` and use it to count.
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