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Old 03-21-2019, 12:04 PM   #1
ssully
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Location: NYC

Join Date: Aug 2010
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Default trimming fastq records based on a coordinates file

I have some fastq files that came with 'clip' files with instructions for quality trimming; a table of lines that are:

read ID -- left clip coordinate --right clip coordinate


I'd like to generate a new fastq file , trimmed according to the clip file.

Does any tool exist for this? Trimming fastq records according to an input file of readID + coordinates?
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