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Old 04-05-2019, 11:50 PM   #1
dineshkumarsrk
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Location: India

Join Date: Mar 2019
Posts: 4
Question Is it possible to print DNA sequences of subject organism in tblastn?

I did tblastn analysis by following command
HTML Code:
tblastn -query t3ss.fasta -subject org1.fasta -outfmt '6  qseqid qstart qend sseqid sstart send pident length evalue sseq' -out org1.xls
It prints the subject coordinates and translated amino acid sequences etc., Is there any way to print the DNA sequences of subject organism in tblastn?
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alignment, blast, sequence analysis, tblastn

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