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Old 03-21-2013, 06:52 PM   #1
nofutur
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Location: eu

Join Date: Mar 2013
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Default Free software for SNP analysis (e.g., Interpretome)

Hi,

I have my SNP data from 23andme and would like to check my data against some public SNP database for various genetic disease predisposition.

I like Interpretome but find it pretty messy.

I used and liked Promethease, however, I am very disappointed to learn that it is no longer free.

I gave a try with IMPUTE2 but it lost me the minute it asked me to download GBs of data.

Is there any software or tool out there to analyze 23andme data?

Thanks
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Old 09-16-2013, 05:24 AM   #2
Knaus
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Default

well, you could try GeneTalk (www.gene-talk.de). I think it does not support 23anMe data in particularm but if you have the VCF file, you could simply upload it.

Contact the support at GeneTalk they might help you in converting the data, if necessary.

If you are interested in participaint in a research project you might want to have a look into www.gene-talk.de/pep GeneTalks Personal Exome Project (PEP) aims to establish a database of genetic sequence variants that is similar to the other large population studies (as e.g. the 1000 genomes project or the 6500 exomes project). GeneTalk will count how often a certain genotype is observed in all participants of the PEP and this genotype frequency of healthy individuals will be freely accessible for the scientific community on the platform. GeneTalk aims to provide a discussion platform for genetic sequence variants and establish a community of experts that exchange mutation-specific information. A crowd-sourced knowledge base would be of high value for Medical Genetics. By analyzing your genetic data at GeneTalk you can contribute to to the growing knowledge base.
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