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Old 08-12-2013, 10:10 AM   #1
manlalayag
Junior Member
 
Location: California

Join Date: Aug 2013
Posts: 3
Default Latest 1000Genome to use for Admixture

Hi all,
I'm looking to perform Admixture analysis with 1000genome and my 23andMe results. My problem is the 1000genome ftp site is HUGE and don't know where the latest files (SNP) to use in Admixture for the comparison.

I found this:
ftp://ftp-trace.ncbi.nih.gov/1000gen...ease/20110521/

and this:
ftp://ftp-trace.ncbi.nih.gov/1000gen...mni_genotypes/

The first one seems like a lot of files but the second one only has about 1367 samples. The 1000genome site says they have about 3000+ samples.

I know it will likely be in the vcf format so I already found a few ways to convert to the PLINK format for the ADMIXTURE analysis input.

NOTE: Apologies: I moved this post to here (Moved post to appropriate category):
http://seqanswers.com/forums/showthr...290#post113290
I had to move since it may not be in the right category.

Last edited by manlalayag; 08-12-2013 at 10:29 AM. Reason: Moved post to appropriate category.
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