I install tophat-2.0.8b to rerun the mapping. but when i make it, the error appears like this.
make[1]: Entering directory `/media/chenzz/software/tophat-2.0.8b'
Making all in src
make[2]: Entering directory `/media/chenzz/software/tophat-2.0.8b/src'
g++ -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -O3 -DNDEBUG -pthread -I/usr/include -I/usr/local/include -I./SeqAn-1.3 -o segment_juncs -L/usr/lib -L/usr/local/lib segment_juncs.o ../src/libtophat.a -lbam -lz
segment_juncs.o: In function `__static_initialization_and_destruction_0':
/usr/local/include/boost/system/error_code.hpp:214: undefined reference to `boost::system::generic_category()'
/usr/local/include/boost/system/error_code.hpp:215: undefined reference to `boost::system::generic_category()'
/usr/local/include/boost/system/error_code.hpp:216: undefined reference to `boost::system::system_category()'
segment_juncs.o: In function `boost::thread::get_id() const':
/usr/local/include/boost/thread/detail/thread.hpp:725: undefined reference to `boost::thread::native_handle()'
segment_juncs.o: In function `boost::thread::join()':
/usr/local/include/boost/thread/detail/thread.hpp:751: undefined reference to `boost::thread::join_noexcept()'
segment_juncs.o: In function `~thread':
/usr/local/include/boost/thread/detail/thread.hpp:255: undefined reference to `boost::thread::detach()'
segment_juncs.o: In function `boost::thread::start_thread()':
/usr/local/include/boost/thread/detail/thread.hpp:180: undefined reference to `boost::thread::start_thread_noexcept()'
/usr/local/include/boost/thread/detail/thread.hpp:180: undefined reference to `boost::thread::start_thread_noexcept()'
segment_juncs.o: In function `boost::thread::get_id() const':
/usr/local/include/boost/thread/detail/thread.hpp:725: undefined reference to `boost::thread::native_handle()'
segment_juncs.o: In function `boost::thread::join()':
/usr/local/include/boost/thread/detail/thread.hpp:751: undefined reference to `boost::thread::join_noexcept()'
segment_juncs.o: In function `~thread':
/usr/local/include/boost/thread/detail/thread.hpp:255: undefined reference to `boost::thread::detach()'
segment_juncs.o: In function `thread_exception':
/usr/local/include/boost/thread/exceptions.hpp:51: undefined reference to `boost::system::system_category()'
segment_juncs.o: In function `~thread_data':
/usr/local/include/boost/thread/detail/thread.hpp:93: undefined reference to `boost::detail::thread_data_base::~thread_data_base()'
/usr/local/include/boost/thread/detail/thread.hpp:93: undefined reference to `boost::detail::thread_data_base::~thread_data_base()'
/usr/local/include/boost/thread/detail/thread.hpp:93: undefined reference to `boost::detail::thread_data_base::~thread_data_base()'
/usr/local/include/boost/thread/detail/thread.hpp:93: undefined reference to `boost::detail::thread_data_base::~thread_data_base()'
segment_juncs.o: In function `thread_data_base':
/usr/local/include/boost/thread/pthread/thread_data.hpp:142: undefined reference to `vtable for boost::detail::thread_data_base'
segment_juncs.o: In function `thread_data':
/usr/local/include/boost/thread/detail/thread.hpp:111: undefined reference to `boost::detail::thread_data_base::~thread_data_base()'
segment_juncs.o.rodata._ZTIN5boost6detail11thread_dataI19SegmentSearchWorkerEE[typeinfo for boost::detail::thread_data<SegmentSearchWorker>]+0x10): undefined reference to `typeinfo for boost::detail::thread_data_base'
collect2: ld returned 1 exit status
make[2]: *** [segment_juncs] Error 1
make[2]: Leaving directory `/media/chenzz/software/tophat-2.0.8b/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/media/chenzz/software/tophat-2.0.8b'
make: *** [all] Error 2
make[1]: Entering directory `/media/chenzz/software/tophat-2.0.8b'
Making all in src
make[2]: Entering directory `/media/chenzz/software/tophat-2.0.8b/src'
g++ -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -O3 -DNDEBUG -pthread -I/usr/include -I/usr/local/include -I./SeqAn-1.3 -o segment_juncs -L/usr/lib -L/usr/local/lib segment_juncs.o ../src/libtophat.a -lbam -lz
segment_juncs.o: In function `__static_initialization_and_destruction_0':
/usr/local/include/boost/system/error_code.hpp:214: undefined reference to `boost::system::generic_category()'
/usr/local/include/boost/system/error_code.hpp:215: undefined reference to `boost::system::generic_category()'
/usr/local/include/boost/system/error_code.hpp:216: undefined reference to `boost::system::system_category()'
segment_juncs.o: In function `boost::thread::get_id() const':
/usr/local/include/boost/thread/detail/thread.hpp:725: undefined reference to `boost::thread::native_handle()'
segment_juncs.o: In function `boost::thread::join()':
/usr/local/include/boost/thread/detail/thread.hpp:751: undefined reference to `boost::thread::join_noexcept()'
segment_juncs.o: In function `~thread':
/usr/local/include/boost/thread/detail/thread.hpp:255: undefined reference to `boost::thread::detach()'
segment_juncs.o: In function `boost::thread::start_thread()':
/usr/local/include/boost/thread/detail/thread.hpp:180: undefined reference to `boost::thread::start_thread_noexcept()'
/usr/local/include/boost/thread/detail/thread.hpp:180: undefined reference to `boost::thread::start_thread_noexcept()'
segment_juncs.o: In function `boost::thread::get_id() const':
/usr/local/include/boost/thread/detail/thread.hpp:725: undefined reference to `boost::thread::native_handle()'
segment_juncs.o: In function `boost::thread::join()':
/usr/local/include/boost/thread/detail/thread.hpp:751: undefined reference to `boost::thread::join_noexcept()'
segment_juncs.o: In function `~thread':
/usr/local/include/boost/thread/detail/thread.hpp:255: undefined reference to `boost::thread::detach()'
segment_juncs.o: In function `thread_exception':
/usr/local/include/boost/thread/exceptions.hpp:51: undefined reference to `boost::system::system_category()'
segment_juncs.o: In function `~thread_data':
/usr/local/include/boost/thread/detail/thread.hpp:93: undefined reference to `boost::detail::thread_data_base::~thread_data_base()'
/usr/local/include/boost/thread/detail/thread.hpp:93: undefined reference to `boost::detail::thread_data_base::~thread_data_base()'
/usr/local/include/boost/thread/detail/thread.hpp:93: undefined reference to `boost::detail::thread_data_base::~thread_data_base()'
/usr/local/include/boost/thread/detail/thread.hpp:93: undefined reference to `boost::detail::thread_data_base::~thread_data_base()'
segment_juncs.o: In function `thread_data_base':
/usr/local/include/boost/thread/pthread/thread_data.hpp:142: undefined reference to `vtable for boost::detail::thread_data_base'
segment_juncs.o: In function `thread_data':
/usr/local/include/boost/thread/detail/thread.hpp:111: undefined reference to `boost::detail::thread_data_base::~thread_data_base()'
segment_juncs.o.rodata._ZTIN5boost6detail11thread_dataI19SegmentSearchWorkerEE[typeinfo for boost::detail::thread_data<SegmentSearchWorker>]+0x10): undefined reference to `typeinfo for boost::detail::thread_data_base'
collect2: ld returned 1 exit status
make[2]: *** [segment_juncs] Error 1
make[2]: Leaving directory `/media/chenzz/software/tophat-2.0.8b/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/media/chenzz/software/tophat-2.0.8b'
make: *** [all] Error 2
Comment