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Old 12-23-2009, 12:22 PM   #1
ptong7
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Location: dublin

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Default SNP mapping quality problem

Hi everyone,

I use glfProgs package calling SNP.
And at the output file, the 5th column is Phred-like consensus quality.
Is anyone can tell me how to calculate the consenses mapping quality ( like the MAQ's mapping quality ) by Phred-like consensus quality ?

thanks a million.
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