Hello All,
I ran the 'samtools flagstat' command, it generated output that doesn't look right. Does anyone have similar problem?
18009870 in total
0 QC failure
0 duplicates
13036424 mapped (72.38%)
0 paired in sequencing
0 read1
0 read2
0 properly paired (nan%)
0 with itself and mate mapped
0 singletons (nan%)
0 with mate mapped to a different chr
0 with mate mapped to a different chr (mapQ>=5)
Thanks,
Ng
I ran the 'samtools flagstat' command, it generated output that doesn't look right. Does anyone have similar problem?
18009870 in total
0 QC failure
0 duplicates
13036424 mapped (72.38%)
0 paired in sequencing
0 read1
0 read2
0 properly paired (nan%)
0 with itself and mate mapped
0 singletons (nan%)
0 with mate mapped to a different chr
0 with mate mapped to a different chr (mapQ>=5)
Thanks,
Ng
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