Hi,
I'm currently working on a project comparing different bacterial strains. I want to confirm my findings by applying my methods to an additional dataset. What I need are two RNA-seq data sets (or more) for different strains of any bacteria that have a reference genome available. For instance, I have vibrio vulnificus CMCP6 and vibrio vulnificus YJ016. It would be nice to have, for instance, two different strains of e.coli that have reference genomes available.
Where can I find this kind of data publicly availalble? I've been looking around genbank and SRA, but havn't done so well. I would appreciate any search tips or advice on where to find some of this sort of data. Thanks very much in advance!
I'm currently working on a project comparing different bacterial strains. I want to confirm my findings by applying my methods to an additional dataset. What I need are two RNA-seq data sets (or more) for different strains of any bacteria that have a reference genome available. For instance, I have vibrio vulnificus CMCP6 and vibrio vulnificus YJ016. It would be nice to have, for instance, two different strains of e.coli that have reference genomes available.
Where can I find this kind of data publicly availalble? I've been looking around genbank and SRA, but havn't done so well. I would appreciate any search tips or advice on where to find some of this sort of data. Thanks very much in advance!
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