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  • Creates BAMBUS .mates file problem asking

    Refer the latest version of BAMBUS, which I read at the following manual:
    Download AMOS for free. AMOS is a collection of tools for genome assembly. AMOS is a collection of tools and class interfaces for the assembly of DNA reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation.

    At the section of creates .mates file, I needed to key in the following info:

    library <name> <min_size> <max_size> <regexp>

    And the example given is showed as:
    library small 2000 4000 (....).*
    pair (.*)\.x1$ (.*)\.y1$

    Can I know what all those small, 2000, 4000,etc refer to?
    Where I can get all this figure?

    Thanks a lot for your advise.

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