Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • how to edit header in a fast file with python

    I am looking to edit the header of a fast file using python. I am converting the DNA sequence to an amino acid sequence and I need to add "-aa" where the first space in the header is located.

    The header looks like this:
    >ANIS1000.x1 ET TIME...

    It needs to look like this:
    >ANIS1000.x1-aa ET TIME...

    I can locate the index of the space using this:
    locate = dnaHeader.find(' ')

    But then I cannot insert the '-aa' using the insert function:
    dnaHeader = dnaHeader.insert(locate, ' ')

    The error says 'str' object does not support item assignment.

    Thanks!
    Brian

  • #2
    You could use:

    Code:
    newHeader= dnaHeader[0:locate] + '-aa' + dnaHeader[locate:]
    Maybe it's not the most efficient strategy since you need to create a new string but unless your file is massive it should be good enough.

    .insert() is a method for lists not for strings, which are immutable.

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Current Approaches to Protein Sequencing
      by seqadmin


      Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
      04-04-2024, 04:25 PM
    • seqadmin
      Strategies for Sequencing Challenging Samples
      by seqadmin


      Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
      03-22-2024, 06:39 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, 04-11-2024, 12:08 PM
    0 responses
    27 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-10-2024, 10:19 PM
    0 responses
    31 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-10-2024, 09:21 AM
    0 responses
    27 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-04-2024, 09:00 AM
    0 responses
    52 views
    0 likes
    Last Post seqadmin  
    Working...
    X