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Old 09-23-2012, 05:47 AM   #1
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Location: India

Join Date: Sep 2012
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Default Comparison of SNPs between case and control sample

I want to compare the SNPs between case and control groups. Which software should I use?
Any help will be appreciated
Maulik23 is offline   Reply With Quote
Old 10-01-2012, 07:16 AM   #2
Location: Boston, MA

Join Date: Apr 2010
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For comparing case and control VCFs you can generate a kind of overlap comparison using this script and the utilities in vcflib:

For generating the variant calls, you have a lot of options
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Old 01-21-2014, 04:31 AM   #3
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Is it possibly that you may update the dead link?
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