Hi everyone,
I'm aware that samtools can produce phased genotypes using the phase option. Since I'm using trio designs (as some of you may have seen from my previous post...), I used bcftools instead. I'm wondering if the resulting vcf contains phased genotypes and if not, what would be the best phasing protocol?
Many thanks!
I'm aware that samtools can produce phased genotypes using the phase option. Since I'm using trio designs (as some of you may have seen from my previous post...), I used bcftools instead. I'm wondering if the resulting vcf contains phased genotypes and if not, what would be the best phasing protocol?
Many thanks!