Hello,
I am trying to find a way to find the second closest gene to a specific peak in a CHIP-seq.
There are many programs to find the closest gene, but I cannot seem to find away to get the second closest gene to a specific peak obtained from a CHIP-seq data.
Can anyone point me to a solution?
I am not very computer savy but I thought bedtools might be an option but I am not sure.
I am not interested in eliminating anything that overlaps the peak. I just want to see the two or more closest TSS to a given summit and distance. I also have a huge amount of peaks to process.
I am new here so sorry if I make any mistakes.
Thanks.
I am trying to find a way to find the second closest gene to a specific peak in a CHIP-seq.
There are many programs to find the closest gene, but I cannot seem to find away to get the second closest gene to a specific peak obtained from a CHIP-seq data.
Can anyone point me to a solution?
I am not very computer savy but I thought bedtools might be an option but I am not sure.
I am not interested in eliminating anything that overlaps the peak. I just want to see the two or more closest TSS to a given summit and distance. I also have a huge amount of peaks to process.
I am new here so sorry if I make any mistakes.
Thanks.