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  • aviable tools for gene collapsing

    Hi:
    I am working on gene annotations from different groups such as Refseq, UCSC, vega and I want to collapse genes or transcripts generated by Alternative splicing or Alernative start site to unify gene list. Some things like UCSC canonical genes (one tanscripts ID represent many others)
    I generated it by myself according to mRNA seq similarity but the output is not satisfied
    So some one know some availble tools to do this thing?

    Thanks

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