Just got Biolinux 8 and trying to install some tools in GALAXY from the toolshed, but seeing this error in the log after I press the INSTALL button in the UI
Any ideas?
Any ideas?
Code:
192.168.50.112 - - [15/Aug/2014:16:38:05 -0600] "GET /galaxy/admin_toolshed/browse_tool_shed?tool_sh ed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F HTTP/1.1" 302 - "http://192.168.50.140:8080/galaxy/adm in_toolshed/browse_tool_sheds" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36 (K HTML, like Gecko) Chrome/36.0.1985.143 Safari/537.36" tool_shed.tool_shed_registry DEBUG 2014-08-15 16:38:15,410 Invalid url 'https://toolshed.g2.bx.psu.e du/' received by tool shed registry's password_manager_for_url method. 192.168.50.112 - - [15/Aug/2014:16:38:15 -0600] "GET /galaxy/admin_toolshed/prepare_for_install?tool _shed_url=https://toolshed.g2.bx.psu.edu/&repository_ids=997cccce43caabe7&changeset_revisions=16ecf2 5d521f HTTP/1.1" 500 - "-" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36 (KHTML , like Gecko) Chrome/36.0.1985.143 Safari/537.36" Error - <type 'exceptions.AttributeError'>: 'NoneType' object has no attribute 'strip' URL: http://192.168.50.140:8080/galaxy/admin_toolshed/prepare_for_install?tool_shed_url=https://tool shed.g2.bx.psu.edu/&repository_ids=997cccce43caabe7&changeset_revisions=16ecf25d521f File '/usr/lib/galaxy-server/lib/galaxy/web/framework/middleware/error.py', line 149 in __call__ app_iter = self.application(environ, sr_checker) File '/usr/lib/galaxy-server/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__ return self.application(environ, start_response) File '/usr/lib/galaxy-server/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __ca ll__ return self.application(environ, start_response) File '/usr/lib/galaxy-server/lib/galaxy/web/framework/base.py', line 132 in __call__ return self.handle_request( environ, start_response ) File '/usr/lib/galaxy-server/lib/galaxy/web/framework/base.py', line 190 in handle_request body = method( trans, **kwargs ) File '/usr/lib/galaxy-server/lib/galaxy/web/framework/__init__.py', line 372 in decorator return func( self, trans, *args, **kwargs ) File '/usr/lib/galaxy-server/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 983 in p repare_for_install includes_tool_dependencies ) File '/usr/lib/galaxy-server/lib/tool_shed/util/common_install_util.py', line 97 in get_dependencies _for_repository repository = suc.get_repository_for_dependency_relationship( trans.app, tool_shed_url, name, repos itory_owner, changeset_revision ) File '/usr/lib/galaxy-server/lib/tool_shed/util/shed_util_common.py', line 1036 in get_repository_fo r_dependency_relationship ( name, owner, changeset_revision ) ) File '/usr/lib/galaxy-server/lib/tool_shed/util/shed_util_common.py', line 1867 in url_join parts.append( arg.strip( '/' ) ) AttributeError: 'NoneType' object has no attribute 'strip' CGI Variables
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