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Old 04-26-2012, 12:41 PM   #1
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Location: pl

Join Date: Apr 2012
Posts: 8
Default Why there is more reads in BAM file than I can see in tview?

Hello group,

Why I can extract more reads from bam files that I can see in 'samtools tview'???
How to force 'samtools tview' to extract same number of reads I can see in tview?
Or how to force tview to show all reads?

Is it depend on MAPQ field value? if yes, please tell me how?

Thank you,

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