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Old 08-03-2015, 11:13 PM   #1
youngjune29bhak
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Location: ulsan

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Default How can i get the number of read aligned to one scaffold

Hi.

I want to get the number of reads aligned to one scaffold.
more specifically,
I want to get the number of reads that aligned to one scaffold with more than 90% or 50 % matched from bam file for assembly assessment.

Is there any tool can i use for purpose??


thanks
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