Hi,
We've sequenced novel strain of fungi (genome ~13Mb). I assembled Illumina reads (paired-ends,75bp) into 300-500 contigs (n50 ~96kb).
Now I'm looking for some soft to scaffold these into supercontigs or even into chromosomes. There is reference genome of that species available, done with Sanger.
Do you know any software that may be useful?
Cheers,
Leeko
We've sequenced novel strain of fungi (genome ~13Mb). I assembled Illumina reads (paired-ends,75bp) into 300-500 contigs (n50 ~96kb).
Now I'm looking for some soft to scaffold these into supercontigs or even into chromosomes. There is reference genome of that species available, done with Sanger.
Do you know any software that may be useful?
Cheers,
Leeko
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