SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Differences between bioanalyzer results and chip-seq results. tamars Bioinformatics 5 04-03-2016 03:41 PM
Weird DE-results ErikFas Bioinformatics 9 02-18-2015 10:08 PM
Bioanalyser results??? ezilybored Sample Prep / Library Generation 15 03-17-2010 12:47 PM
Displaying Results genbio64 Bioinformatics 0 02-26-2010 11:09 AM

Reply
 
Thread Tools
Old 09-05-2018, 05:25 AM   #1
dayana42200
Junior Member
 
Location: Malaysia

Join Date: Apr 2018
Posts: 3
Default ssearch35 results

Hello everyone.

Can someone explain to me what does the lambda, K, and E means?
The result is generated using ssearch35 software.
or maybe can share the user guide or manual?

Thank in advance.

Query: 641, 114 nt
1>>>641 - 114 nt - 114 nt641.txt
Library: ss35.txt 37666 residues in 11 sequences

37666 residues in 11 sequences
Statistics: (shuffled [500]) MLE statistics: Lambda= 0.1448; K=0.1411
Algorithm: Smith-Waterman (PGopt) (6.0 Mar 2007)
Parameters: +5/-4 matrix (5:-4), open/ext: -12/-4

The best scores are: s-w bits E(11)
11 (3426) [f] 570 121.9 8.6e-031
7 (3426) [f] 570 121.9 8.6e-031
s10 (3425) [f] 570 121.9 8.6e-031
9 (3425) [f] 570 121.9 8.6e-031
s4 (3425) [f] 570 121.9 8.6e-031
2 (3425) [f] 570 121.9 8.6e-031
6 (3422) [f] 570 121.9 8.6e-031
5 (3422) [f] 570 121.9 8.6e-031
3 (3422) [f] 570 121.9 8.6e-031
1 (3424) [f] 570 121.9 8.6e-031
8 (3424) [f] 570 121.9 8.6e-031
dayana42200 is offline   Reply With Quote
Reply

Tags
bioinformatics, sequencing, ssearch35

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 10:08 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO