Hi All,
I wish to usea CEAS to annotate the ChIP-seq peaks called from MACS. The command is:
ceas --name=file.ceas -g ../RefGenome/mm9.refGene -b file.macs_peaks.bed -w file.macs.wig.gz
But here came an error message:
The program still generated a .xls file and a .r file. But the .r file only draw first three pages of figures. So I suspect the .xls file is also not a complete annotation list.
Could anyone help me to solve the problem?!
I wish to usea CEAS to annotate the ChIP-seq peaks called from MACS. The command is:
ceas --name=file.ceas -g ../RefGenome/mm9.refGene -b file.macs_peaks.bed -w file.macs.wig.gz
But here came an error message:
Traceback (most recent call last):
File "/usr/local/bin/ceas", line 1343, in <module>
main()
File "/usr/local/bin/ceas", line 247, in main
if chrom=='' and chrom!=newchrom:
UnboundLocalError: local variable 'newchrom' referenced before assignment
File "/usr/local/bin/ceas", line 1343, in <module>
main()
File "/usr/local/bin/ceas", line 247, in main
if chrom=='' and chrom!=newchrom:
UnboundLocalError: local variable 'newchrom' referenced before assignment
Could anyone help me to solve the problem?!
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