Hi all,
I have RNA sequencing data (D. melanogaster) from r7 and r9 flowcells. What would be your suggestion for a mapper? I'm mostly interested in benchmarking isoform detection compared to illumina HiSeq2500/PacBio RSII. I'd like to do a benchmarking of the "established" tools (since I realized this knowledge is missing), but you can suggest new ones.
Thanks in advance for suggestions.
I have RNA sequencing data (D. melanogaster) from r7 and r9 flowcells. What would be your suggestion for a mapper? I'm mostly interested in benchmarking isoform detection compared to illumina HiSeq2500/PacBio RSII. I'd like to do a benchmarking of the "established" tools (since I realized this knowledge is missing), but you can suggest new ones.
Thanks in advance for suggestions.
Comment