does anyone know how to convert a newbler derived ace file to amos bnk so i can use amosvalidate. I know the standard command to do this using toAmos, however, we i do this lose mate pair information.
I tried using toAmos with a traceinfo file derived from sff_extract which seemed to work but when i ran amosvalidate i encountered the following error
Command: /usr/local/bioinf/Amos/bin/asmQC -b 454Contigs.bnk -scaff -recompute -update -numsd 2 exited with status:1
can anyone help?
regards
Brian
I tried using toAmos with a traceinfo file derived from sff_extract which seemed to work but when i ran amosvalidate i encountered the following error
Command: /usr/local/bioinf/Amos/bin/asmQC -b 454Contigs.bnk -scaff -recompute -update -numsd 2 exited with status:1
can anyone help?
regards
Brian
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