Hi, starting on my very first NGS project...
I have 2 sequenced exomes in FASTQ format and I want to do a couple basic things:
1. Compute some usual summary statistics for each of the exomes - # of cSNPS, % in dbSNP, #Heterozygous and #homozygous
2. Get a list of SNPs that are common between the 2 exomes.
I have been looking into various software options, etc but thought here would be a good place to get some guidance.
Thanks in advance.
I have 2 sequenced exomes in FASTQ format and I want to do a couple basic things:
1. Compute some usual summary statistics for each of the exomes - # of cSNPS, % in dbSNP, #Heterozygous and #homozygous
2. Get a list of SNPs that are common between the 2 exomes.
I have been looking into various software options, etc but thought here would be a good place to get some guidance.
Thanks in advance.