I am doing RNA seq analysis for different gene expression analysis. I find that people use two approaches:
1. Tophat - HtSeq - edgeR or DESeq R package
2. Tophat - Cufflinks -Cuff Diff
which approach that your guys use most? any advice?
1. Tophat - HtSeq - edgeR or DESeq R package
2. Tophat - Cufflinks -Cuff Diff
which approach that your guys use most? any advice?
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