Hi SEQ Answers,
Long time reader, first time poster, all around noobie. I have been working with .bam files in a non-canonical reference (but have a .chain file linking the non-canonical reference back to b37). I want to create a new bam file that is based on b37 coordinates. Given that these files, what would be the fastest/most elegant way to convert/liftover to coordinates? Any applications you recommend specifically?
Best,
AJB
Long time reader, first time poster, all around noobie. I have been working with .bam files in a non-canonical reference (but have a .chain file linking the non-canonical reference back to b37). I want to create a new bam file that is based on b37 coordinates. Given that these files, what would be the fastest/most elegant way to convert/liftover to coordinates? Any applications you recommend specifically?
Best,
AJB
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