Hi all,
I am now using picard v1.58. I want to use CleanSam to soft-clip alignment that hands-off the end of chromosome.
However, I find that the cleansam output bam file has almost no difference with the input bam except adding a @HD line.
What's the problem?
My command is as simply as follows:
java -Xmx4G -jar CleanSam.jar INPUT=SRR305172.bam OUTPUT=SRR305172_cleaned.bam
thanks.
I am now using picard v1.58. I want to use CleanSam to soft-clip alignment that hands-off the end of chromosome.
However, I find that the cleansam output bam file has almost no difference with the input bam except adding a @HD line.
What's the problem?
My command is as simply as follows:
java -Xmx4G -jar CleanSam.jar INPUT=SRR305172.bam OUTPUT=SRR305172_cleaned.bam
thanks.