Hi guys,
I d like to cat or merge 2 BAMs file. My problem is that I try to cat the two BAMs but when I ve used IGV to see the result the file doesn t work well. the 2 BAMs file instead (after sorted and indexed of course) work normally.
I concluded that likely the problem is in cat process so I try merge command, but the program give me error: "different target sequence name".
I d like to cat or merge 2 BAMs file. My problem is that I try to cat the two BAMs but when I ve used IGV to see the result the file doesn t work well. the 2 BAMs file instead (after sorted and indexed of course) work normally.
I concluded that likely the problem is in cat process so I try merge command, but the program give me error: "different target sequence name".
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