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Old 03-18-2014, 07:32 PM   #1
Votinhkiem90
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Default How to make alias file and run rpsbalst

hi everyone.
I have a problem, I have downloaded CDD database on NCBI and install ncbi-blast+. but when i run rpsblast have an error.
"BLAST Database error: Could not find volume or alias file (./home/lamnguyen/bin/ncbi-blast-2.2.29+/CDD/Cdd) referenced in alias file (/home/lamnguyen/bin/ncbi-blast-2.2.29+/bin/mycdd)"

mycdd has cread by http://www.ncbi.nlm.nih.gov/Structur....shtml#RPSBFtp

What should I do????:
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Old 03-19-2014, 06:22 AM   #2
TiborNagy
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Please share us the steps.
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Old 03-19-2014, 11:02 PM   #3
Votinhkiem90
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Quote:
Originally Posted by TiborNagy View Post
Please share us the steps.
Thank for attention! I have finished it. I forgot run makeprofiledb to creat database before running rpsblast.
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Old 03-20-2014, 07:14 AM   #4
maubp
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Or just download the CDD database ready to use from ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/little_endian/
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