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Old 11-06-2015, 06:58 AM   #1
micron
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Location: stockholm, sweden

Join Date: Sep 2014
Posts: 1
Default Homer makeTagDirectory error with hg19

I have installed hg19 for homer but when I try to make a tag directory:

makeTagDirectory my_tagDirectory -checkGC -genome hg19 -format bed myfile.bed

I get the following error messages:
Couldn't open a sequence file for "1" (home/user/glob/homer//data/genomes/hg19//genome.fa.masked)

...and so on for every chromosome.

I tried giving homer the genome in a separate fasta file, and then it works.

Any tips on what might be the problem?
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