I wanted to let the community know about a new release of BFAST that now supports reads with quality scores.
It is designed to handle Illumina and ABI SOLiD data on the human whole-genome resequencing scale (billions of reads). It is multi-threaded and can be easily be parallelized on a cluster, or on your local desktop. You can easily tune it to handle large insertions or deletions (>10bp) in your alignment, SNPs, and even appropriately mapping ABI SOLiD color errors, all while maintaining speed and accuracy.
It is designed to handle Illumina and ABI SOLiD data on the human whole-genome resequencing scale (billions of reads). It is multi-threaded and can be easily be parallelized on a cluster, or on your local desktop. You can easily tune it to handle large insertions or deletions (>10bp) in your alignment, SNPs, and even appropriately mapping ABI SOLiD color errors, all while maintaining speed and accuracy.
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