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Old 04-12-2011, 03:09 AM   #1
behroozt
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Location: sweden

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Default phastCons scores

Hello Everyone,

I am doing annotation for some SNPs , and I am using Annovar for that.

Does any one know what the columns in hg18_phastConsElements44way file are ?
And what do the phastCons scores say?

when I do annotation according that database , the output file has rows like this :
mce44way Score=388;Name=lod=50 1 67478546 67478546 G A comments: rs11209026 (R381Q), a SNP in IL23R associated with Crohn's disease

what are the Score=388 and Name=lod=50 ?

Thanks in advance for your help.

Regards,
BigBen
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Old 07-29-2011, 06:41 AM   #2
spabinger
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Default

Maybe this page could help you with your question:

http://genomebrowser.uchicago.edu/cg...e+table+schema

Best,
Stephan
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