Go Back   SEQanswers > Applications Forums > Epigenetics

Similar Threads
Thread Thread Starter Forum Replies Last Post
ChIP-Seq: Systematic bias in high-throughput sequencing data and its correction by BE Newsbot! Literature Watch 0 06-08-2011 02:50 AM
ChIP-Seq: MM-ChIP enables integrative analysis of cross-platform and between-laborato Newsbot! Literature Watch 0 02-03-2011 02:40 AM
ChIP-Seq: Systematic characterization of protein-DNA interactions. Newsbot! Literature Watch 0 01-06-2011 03:40 AM
ChIP-Seq: Systematic identification of conserved motif modules in the human genome. Newsbot! Literature Watch 0 10-16-2010 02:00 AM
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls. merilius Literature Watch 0 01-16-2009 03:21 AM

Thread Tools
Old 01-06-2009, 07:08 PM   #1
--Site Admin--
Location: SF Bay Area, CA, USA

Join Date: Oct 2007
Posts: 1,358
Default New software: PeakSeq enables systematic scoring of ChIP-seq expts
ECO is offline   Reply With Quote
Old 12-27-2009, 11:55 PM   #2
Junior Member
Location: shanghai

Join Date: Mar 2009
Posts: 4

I downloaded all the data, and used perl version to test with the default parameter(only changed the path). Pf was set to 0 according to the paper. My sgr files were the same as that of the website. But I got a different result. The final regions are different from 24,739 in the paper. Does anyone test this? And whether there are other parameters i haven't considered? Thank you so much!
blackjimmy is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 02:29 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO