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Cuffdiff promoter switch identification gik Bioinformatics 0 08-27-2012 06:49 AM

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Old 02-28-2020, 09:40 PM   #1
Location: Hyderabad, India

Join Date: Apr 2010
Posts: 65
Default Promoter Identification programs

Hello All,

I would like to know if there are any specific programs out there that help to identify promoters in PLANTS. Specifically I am interested in identifying locations of TSS, TATA, CAAT and GC boxes. Command version would be best to have. I have tried TSSPlant, however, I found its web results to be inconsistent with the command line version. Also it gives only the putative TSS and TATA. Most other programs I found, are trained on Human or mouse data, that rely on having access to high-confidence TSS sites. I have high-confidence Start codon sites.

Please advice.

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bioinformatics, promoter, tata box, tss

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