I used CEGMA VM on windows 7 Operating system. I used virtual box for VM and followed steps as in:http://korflab.ucdavis.edu/datasets/cegma/cegma_vm.html
CEGMA did run successfully, but it does not produce the completeness report, I paste below the last commands from CEGMA
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evaluating results and comaring to set of 248 highly conserved CEGS
running:completness local_self.hmm_select.aln /opt/CEGMA_v2.5/data/completeness_cutoff.tbl>output.completeness_report
use of uninitialized value in division (/) at /opt/CEGMA_v2.5/bin/completeness line 252
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I understand some error in perl code (completeness.pl) of CEGMA. How to fix this?. Does intializing the value fix the this issue?
Any suggestion.
CEGMA did run successfully, but it does not produce the completeness report, I paste below the last commands from CEGMA
----------------------------------------------------------------
evaluating results and comaring to set of 248 highly conserved CEGS
running:completness local_self.hmm_select.aln /opt/CEGMA_v2.5/data/completeness_cutoff.tbl>output.completeness_report
use of uninitialized value in division (/) at /opt/CEGMA_v2.5/bin/completeness line 252
----------------------------------------------------------
I understand some error in perl code (completeness.pl) of CEGMA. How to fix this?. Does intializing the value fix the this issue?
Any suggestion.
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