Hi!
I want to compare an existing result from QIIME to cd-hit-otu-illumina.
cd-hit asks
"Barcodes should be removed. All the tags must start at 5' with the same rRNA primer shared by all rRNA genes (rare wrong base calls or small variations are ok - we will filter and trim them away). "
I know trimmomatic, but i think it can only remove adapters?
Any idea for removal of barcodes and adaptor sequences?
Thank you!
I want to compare an existing result from QIIME to cd-hit-otu-illumina.
cd-hit asks
"Barcodes should be removed. All the tags must start at 5' with the same rRNA primer shared by all rRNA genes (rare wrong base calls or small variations are ok - we will filter and trim them away). "
I know trimmomatic, but i think it can only remove adapters?
Any idea for removal of barcodes and adaptor sequences?
Thank you!
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