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Old 11-15-2013, 08:43 AM   #1
csmatyi
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Location: Nebraska

Join Date: Oct 2011
Posts: 25
Default SOAP pipeline

Hello everybody,

I would like to know if there is a description of a SOAP pipeline out there anywhere.

I have 2 paired end fastq files. I want to align these to the hg19 genome, and find SNPs. Does anyone know how to do this in SOAP?

At this website: http://soap.genomics.org.cn/soapsnp.html
they have a number of tools. It's just that it's not all clear to me which one to use, and in which order.

Thanks, csmatyi
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