SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Batch bias while merging TrueSeq PCR-free and Nano data hudja Illumina/Solexa 0 09-30-2016 12:34 PM
Free Ebook on Bioinformatics Tools - Feel Free to Grab It samanta Bioinformatics 0 05-20-2015 05:41 PM
ChIP-Seq: On weight matrix and free energy models for sequence motif detection. Newsbot! Literature Watch 0 12-07-2010 02:00 AM

Reply
 
Thread Tools
Old 04-11-2017, 07:05 AM   #1
Marcos Lancia
Member
 
Location: Argentina

Join Date: Apr 2015
Posts: 31
Question Calculating free energy in batch

Hi everyone, Im working with 3'-UTR and 5'-UTR sequences of a group of genes of interest. I'd like to calculate their free Gibbs energy in batch. I found a web tool called MFOLD (http://unafold.rna.albany.edu/?q=mfold/rna-folding-form) but I can calculate free energy one by one. Anybody knows a tool for calculate free energy of 500 sequences in a row?

Thanks a lot,
Marcos Lancia is offline   Reply With Quote
Old 04-11-2017, 09:43 AM   #2
fanli
Senior Member
 
Location: California

Join Date: Jul 2014
Posts: 198
Default

You can download either MFold (http://unafold.rna.albany.edu/?q=mfold/download-mfold) or RNAfold (http://www.tbi.univie.ac.at/RNA/) as standalone software to do a batch.
fanli is offline   Reply With Quote
Reply

Tags
batch, gibbs energy

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 07:07 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO