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Old 08-04-2010, 03:54 PM   #1
glacerda
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Location: Brazil

Join Date: Aug 2008
Posts: 27
Default Scaffolding tool

Do you know any scaffolding tool targeted to NGS plattaforms? I am looking for something that can use contig fastas and aligned paired ends (eg SAM format) as input.

I know that most assemblers produce scaffolds natively nowadays, but there are some occasions in which an external tool is necessary.

I only know Bambus, but I think it would be a bit difficult to convert aligned paired end data to Bambus.

Any suggestions?

Thank you very much!
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