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Old 07-19-2011, 06:32 AM   #1
papori
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Location: berd

Join Date: Dec 2010
Posts: 180
Default estimate differential expression

Hi all,
I want to estimate differential expression between 2 samples of the same organism.

I thought that if the expression of "someGene" in sample 1 is 500 FPKM unit,
and the expression of "someGene" in sample 2 is 700 FPKM unit
the differential expression is |200| in fpkm unit.

because i deal with the same gene, same length. (assuming not including isoforms)

Am i right?
Is threre a recomended tool for differential expression dor DeNovo assembly?

Thanks
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