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Old 11-02-2014, 02:17 PM   #1
ddoopus
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Default na12878 ground truth SVs

Hi,

Are there any available ground truth SV sets for the individual na12878 beyond what is presented in additional material of "Mapping copy number variation by population-scale genome sequencing" from Mills et al and "LUMPY: a probabilistic framework for structural variant discovery" from Layer et al? I tried looking, but haven't been able to find anything referenced beyond these two.

Thanks!
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Old 11-03-2014, 11:57 AM   #2
m_two
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1000 Genomes FTP site has some recent data

ftp://ftp.1000genomes.ebi.ac.uk/vol1...umina_Platinum

ftp://ftp.1000genomes.ebi.ac.uk/vol1...na12878_pacbio

ftp://ftp.1000genomes.ebi.ac.uk/vol1...2878_moleculo/
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Old 11-04-2014, 04:28 PM   #3
ddoopus
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These are raw reads though, not validated SV calls.
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Old 11-10-2014, 02:34 PM   #4
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http://genomeinabottle.org/blog-entr...lable-ftp-site
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