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Old 03-22-2017, 07:42 AM   #1
cbaudo
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Location: Missouri

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Default Visualize just non-synonymous variants in IGV

Hello,

I used snpeff to annotate a set of variants and I would like to only visualize where a particular type of variant (non-synonymous mutations) localize on the chromosomes in the IGV.

Is there a method for doing this from the vcf file or do I need to extract the non-synonymous variants first?

cheers,
Charles
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