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Old 06-11-2012, 09:48 AM   #1
zee
NGS specialist
 
Location: Malaysia

Join Date: Apr 2008
Posts: 249
Default OpenGE on Redhat

Hi

I am trying to get the openGE binaries working on Redhat enterprise machines. openge fails with the following error:


Code:
openge: symbol lookup error: openge: undefined symbol: _ZZN8BamTools12IBamIODevice14SetErrorStringERKSsS2_E9SEPARATOR
I am using Redhat 6, linux 64-bit.

Code:
Linux 2.6.18-238.el5 #1 SMP Sun Dec 19 14:22:44 EST 2010 x86_64 x86_64 x86_64 GNU/Linux
Is there something I am missing?
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Old 06-11-2012, 10:51 AM   #2
adaptivegenome
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Location: US

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We tested the binaries on an EC2 image of RHEL. It works fine there. However, we will take a look at a local installation of RedHat to see if we can reproduce the error as we would like users to be able to get going with the binaries.

In the worst case, you would have to install zlib, boost, and bamtools; and then compile from source.

Hopefully by the next release we can supplement the binaries with RPM and DEB packages. Should make install easier.
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Old 10-12-2012, 03:10 PM   #3
adaptivegenome
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We now have an RPM for OpenGE! Send me a direct PM and ill share it with you. The next release of OpenGE will feature source, binaries, RPM, and DEB.
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