Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
estimate differential expression papori De novo discovery 0 07-19-2011 06:32 AM
Differential expression graphics Chuckytah Bioinformatics 10 06-18-2011 01:34 PM
differential expression for de novo papori De novo discovery 2 05-26-2011 08:12 AM
Determining differential expression swarbre Bioinformatics 0 11-12-2010 09:38 AM
how to study differential expression? beliefbio Bioinformatics 23 08-05-2010 04:04 AM

Thread Tools
Old 07-07-2010, 04:16 PM   #1
Junior Member
Location: georgia

Join Date: Jul 2010
Posts: 2
Default Differential expression


I d like to test differential expression between two conditions (i.e. treatment vs control, without replicates) but taken into account isoforms. So, if I want to use DESeq, my question is how to obtain the raw counts from cufflinks and at the same time deal with the uncertainty in the assignment of reads to transcripts.
noe is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 03:45 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO