Hello all,
I used the extractor function to get CpG counts.
bismark_methylation_extractor -p --no_overlap --bedGraph --counts --buffer_size 10G --cytosine_report --genome_folder genome.fa filename_bismark_bt2_pe.bam -o
I expect one file from the output to show cytosine_report, but I'm not getting it.
Wonder which part I did wrong?
Thanks!
Regards,
bbm
I used the extractor function to get CpG counts.
bismark_methylation_extractor -p --no_overlap --bedGraph --counts --buffer_size 10G --cytosine_report --genome_folder genome.fa filename_bismark_bt2_pe.bam -o
I expect one file from the output to show cytosine_report, but I'm not getting it.
Wonder which part I did wrong?
Thanks!
Regards,
bbm
Comment