Hello all, I'm a novice bioinformatician and have developed a NGS analysis pipeline majorly for SNP calling. I would like to evaluate the accuracy of my pipeline either against a set of genotyped SNP list or a simulated reading. I have already looked at wgsim tool, which is pretty impressive but I got doubts with the parameters of wgsim_eval.pl which are explained nowhere, even in their read me files. Any help or suggestion would be much appreciated.
Thanks
UPDATE: I found the parameter definitions for wgsim_eval.pl, they are already included in the seperate wgsim package which is not an integration of samtools, in which I found no information.
Thanks
UPDATE: I found the parameter definitions for wgsim_eval.pl, they are already included in the seperate wgsim package which is not an integration of samtools, in which I found no information.
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