Hello,
I want to look for a specific gene in a genome sequence. The gene sequence is degenerate and a colleague has suggested that I should make a multiple alignment of orthologous genes, make a consensus and look for the gene with this consensus sequence.
Do you know a software which may produce a pairwise alignment from a consensus as a query sequence ?
Thank
I want to look for a specific gene in a genome sequence. The gene sequence is degenerate and a colleague has suggested that I should make a multiple alignment of orthologous genes, make a consensus and look for the gene with this consensus sequence.
Do you know a software which may produce a pairwise alignment from a consensus as a query sequence ?
Thank
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